MCP server intelligence profile

PDBe MCP Servers MCP Server

Provides seamless access to the Protein Data Bank in Europe (PDBe) API and search capabilities, enabling AI clients to query protein structures, perform advanced searches, and retrieve structural biology data

Local OnlyOfficial distributionPDBeurope

1Distribution channel

PendingTool inventory

0Linked remote endpoints

AvailableVersion intelligence

Install and connect

Installation and connection instructions are shown only when supported by retained package, repository, or endpoint evidence.

Install pdbe-mcp-server from PyPI

Version 1.1.6 declares 1 executable entrypoint.

python -m pip install 'pdbe-mcp-server==1.1.6'

uvx --from 'pdbe-mcp-server==1.1.6' pdbe-mcp-server

MCP client configuration example

{
  "mcpServers": {
    "pdbe-mcp-server": {
      "command": "uvx",
      "args": [
        "--from",
        "pdbe-mcp-server==1.1.6",
        "pdbe-mcp-server"
      ]
    }
  }
}

Build from source

Clone the canonical public repository, then follow its version-specific setup documentation.

git clone https://github.com/pdbeurope/pdbe-mcp-servers

Identity

Canonical slug	`pdbe-mcp-servers-021b05c7`	Deployment	Local Only
Canonical package	pypi:pdbe-mcp-server	Repository	https://github.com/pdbeurope/pdbe-mcp-servers
First published	Jul 29, 2026	Latest release	Jul 29, 2026
Last security verification	—	Classification confidence	90%
Publication	Published	Official distribution	Yes

Distributions

Channel	Identifier	Current version	Versions	Source
pypi	pdbe-mcp-server	`1.1.6`	1	Repository

Current release

Package	Version	Published / observed	Inventory	Security scan
pypipdbe-mcp-server	`1.1.6`Current	Jul 29, 2026	—	Not scanned

Enterprise protection

Continuously monitor this MCP for security risk

Independently scan the exact version your agents use, receive alerts when its risk changes, and investigate every finding with retained version evidence.

Independent exact-version security scans
Continuous release and vulnerability monitoring
Risk-change alerts with capability context
Historical evidence and API exports

Custom pricingContact salesTailored to your organization, integrations, data needs, and support requirements.

Current version evidence

Provenance	artifact_hash_verified	Signature	—
MCP SDK	python_mcp_source_evidence	Artifact SHA-256	`c6b5b73a4a9cfd63f9faf891c39111defe54b8ff511e444b9ddfeaecc4247886`
Scanner	—	Scan completed	—
Security rating	45 / 100	Methodology	version-rating-1.0

Executable entrypoints

[
  "pdbe-mcp-server"
]

Rating reasons

[
  "security_policy_not_observed"
]

Best available protocol inventory

Tool inventory is pending. This does not mean the MCP exposes zero tools. Tools, resources, templates, and prompts appear here after the current version completes independent protocol inventory.

Remote endpoints

Endpoint	Transport	Authentication	Health	Observed
No verified remote endpoint is linked.

PDBe MCP Servers MCP Server questions

How do I install PDBe MCP Servers MCP Server?

Install the selected package version with: python -m pip install 'pdbe-mcp-server==1.1.6'

What tools does PDBe MCP Servers MCP Server provide?

A current independently observed tool inventory is not available yet. This does not mean PDBe MCP Servers MCP Server exposes zero tools.

Is PDBe MCP Servers MCP Server secure?

The selected current version does not yet have completed public verification. Unknown does not mean clean or vulnerable.

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